Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015921324.1_cds_XP_016470299.1_62762
CDS Infomation

[gene=LOC107792589] [db_xref=GeneID:107792589] [protein=AUGMIN subunit 3-like isoform X2] [protein_id=XP_016470299.1] [location=complement(join(101976..102107,102301..102396,102879..102954,103901..104042,104111..104222,104795..104947,105182..105237,105325..105382,105646..105715,106730..106861,107511..107565,107750..107834,108862..108965,109603..109666,110071..110266,110853..110956,111492..111528,112912..113087))] [gbkey=CDS]
Sequence

ATGAGCGGTGCGCGATTATGCGCATTGCTTGGGGAATTGGGTTACGAAGGTCACGAATCA
CTTGATCCTGATAGTTTCGAGTGGCCTTTCCAATACGACGACGCTAGACCAGTCCTGGAC
TGGCTTTGCTCTAGCCTTCGCCCTTCTAATGTCCTTTCCCCATCCGAAGTTACACAGTAC
GAGCAGCTTTTACAGGAAGAGAAGCTGTTGGAGGGAGAAGATCTAGACTTTGCTTATGAC
AGCATTTCAGCCTTCTCAACAAGGAGAGAAAACCAAGAGGCAGTTTTCGGAAGTGAAGAA
GGATTGAAGGATATACGAGATGCAACTTTAGCATTAAAAGCAGAAGAATTGGAGTTGCAG
AAACAGCTGAGACGATTGCAGTCTCAATATGATATGCTCACGGGCCAGGCTTCTGCATTG
ATTCAGGGGAGAAGGGCTCGAGTTGCAGCAACTTCTATTCTCAATGGACAGCAGGCTACC
ACAGATGATAGCCTTTCAGCAAGGAATCTAGAGATGAATGCAGTTCTTGGAAGGATGGCT
TCTACTGCGCAGGAGTTGGCACACTATCATTCAGGGGAAGATGGAATATACCTTTCTTAC
TCGGACTTCCATGCATATCTGCTGGTGGACGCATTTTGTGTGAAAGAGTTAAATCAGTGG
TTTACCAAGCATCTAGATACAGGTCCTTACAGATTAGTTGCAGAGGAGGGAAAGTCAAAA
TGTTCATGGGTTAGCCTCAATGACATATCAAACGTTTTACTACGAGATCTGGAAAAGTCA
CACCACCAGCGTGTTTCTGAACTGCAACGCCTTCGCTCCATATTTGGCCCAAGTGAGAGG
CAATGGATAGAAGCTCAAGTTGAGAATGCTAAGCAACAAGCTATTCTTACTGCGCTTAAG
GGTCAAGTGACATCAGATGAGGCTCACATTCATCTGGACCTTCATTCTCTTCGGAGAAAA
CATGCTGAACTAGTTGGAGAAATTTCAATTTTATATCGCAAAGAAGAGAAGTTATTATCA
GAGACTATACCTGATCTTTGTTGGGAGCTGGCTCAGCTGCAAGACACATACATCTTGGAA
GGGGATTATGATCTAAAGGTCATGCGCCAAGAATTCTACATTAATCGGCAAAAAGCGTTC
ATAAATCATTTAATTAATCATGTTGCAAGGCATCAATTTCTGAAAGTAGCATGTCAGTTG
GAAAAGAAGACCATGCTTGGGGCATTTTCATTGCTTAAAGTTATTGAGTCTGAGCTGCAC
GGATACCTGTCAGCAACAAAAGGCAGAGTGGGTCGGTGCATGGCACTGATTCAAACTGCT
TCTGATGTTCAAGAACAAGGGGCAGTGGATGATCGTGATACATTTCTTCATGGCATCAGA
GACCTTCTAAGTTTATATTCAAATATTCAAGCTGGTCCATCAACATATGTATCGGCACCT
GGCATTGTTCAACATATATCAATCCTTCGTTCTGATCTCATGTCTTTACAATATGACCTT
GAACACACCCTTCCTCAGGATAGAGATACATGTATAAACAAACTGTGCACCCTTCTTCAA
AGTTTGCAGCAGCTATTGTTTGCTTCATCAACAACTGCGCAACCAATTTTAACTCCTCAG
ACACTAATGAAGCAGCTAGCAACATTGGAAGACTACAATAAAAACCTTTCTCGCGCCATT
GAAGATGTGACCAGTGAACATCTGAAGAAGAATGAGATTTACAGACATCAAAAAGCCGAG
AAGACAATCGAGAGGCGAGTTTTTGTTGATTTCTTCTGCTACCCTGAGCGCTTAAGAAAC
AAGGTCATGGAATTTGCTGCAAGTGTTGGGGCTTTGCAATCGTCATAG

Peptide Sequence

PEP ID

XP_016470299.1
PEP Infomation

PREDICTED: AUGMIN subunit 3-like isoform X2 [Nicotiana tabacum]
Sequence

MSGARLCALLGELGYEGHESLDPDSFEWPFQYDDARPVLDWLCSSLRPSNVLSPSEVTQY
EQLLQEEKLLEGEDLDFAYDSISAFSTRRENQEAVFGSEEGLKDIRDATLALKAEELELQ
KQLRRLQSQYDMLTGQASALIQGRRARVAATSILNGQQATTDDSLSARNLEMNAVLGRMA
STAQELAHYHSGEDGIYLSYSDFHAYLLVDAFCVKELNQWFTKHLDTGPYRLVAEEGKSK
CSWVSLNDISNVLLRDLEKSHHQRVSELQRLRSIFGPSERQWIEAQVENAKQQAILTALK
GQVTSDEAHIHLDLHSLRRKHAELVGEISILYRKEEKLLSETIPDLCWELAQLQDTYILE
GDYDLKVMRQEFYINRQKAFINHLINHVARHQFLKVACQLEKKTMLGAFSLLKVIESELH
GYLSATKGRVGRCMALIQTASDVQEQGAVDDRDTFLHGIRDLLSLYSNIQAGPSTYVSAP
GIVQHISILRSDLMSLQYDLEHTLPQDRDTCINKLCTLLQSLQQLLFASSTTAQPILTPQ
TLMKQLATLEDYNKNLSRAIEDVTSEHLKKNEIYRHQKAEKTIERRVFVDFFCYPERLRN
KVMEFAASVGALQSS

Transcript Sequence

Gene sequence data has not been registered.